# hmmsearch :: search profile(s) against a sequence database # HMMER 3.0 (March 2010); http://hmmer.org/ # Copyright (C) 2010 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: Terpene_synth_N.hmm # target sequence database: Physcomitrella-patens.faa # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Terpene_synth_N-terminal [M=192] Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 1.5e-49 169.3 0.0 2.8e-49 168.4 0.0 1.5 1 XP_001770788.1 predicted protein [Physcomitrella patens] 7.4e-15 56.1 0.0 1.4e-14 55.2 0.0 1.5 2 XP_001771518.1 predicted protein [Physcomitrella patens] 2e-14 54.7 0.0 2.1e-14 54.6 0.0 1.0 1 XP_001751332.1 predicted protein, partial [Physcomitrella pa Domain annotation for each sequence (and alignments): >> XP_001770788.1 predicted protein [Physcomitrella patens] # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 168.4 0.0 2.4e-53 2.8e-49 1 192 [] 182 388 .. 182 388 .. 0.87 Alignments for each domain: == domain 1 score: 168.4 bits; conditional E-value: 2.4e-53 --------------------------------......----------....--------------------------------- CS Terpene_synth_N-terminal 1 dwgdvfllslkngslfnspsataealeeeaek......lkeevrkllk....avpavypkdleekLelidtLqrLGisyhFeeeI 75 dw++ + l+ +ngs++ sp++ta+al+ +++ l ++ll a+p+vyp+dl+e+L+++d+LqrLGis++Fe+eI XP_001770788.1 182 DWNKLLQLQSENGSFLYSPASTACALM-YTKDvkcfdyL----NQLLIkfdhACPNVYPVDLFERLWMVDRLQRLGISRYFEREI 261 7**************************.88885654444....666667899********************************* PP ---------------------.....---------------------------------------.--...-------------- CS Terpene_synth_N-terminal 76 keiLdeiyrsweekkseeeed.....dletvAlaFrLLRqhGydvssdvFkkFkdeegnfkesls.ed...vkgllsLYeAshls 151 +++L+++yr+w++ ++ +++ d++++A+aFrLLR+hG+dv++d F++F ++g+f ++++ ++ v+g+++L +As+ XP_001770788.1 262 RDCLQYVYRYWKD-CGIGWASnssvqDVDDTAMAFRLLRTHGFDVKEDCFRQFF-KDGEF-FCFAgQSsqaVTGMFNLSRASQTL 343 ************9.666666667899****************************.56667.6777444678************** PP --------------------------.--..---.---------- CS Terpene_synth_N-terminal 152 tegeeiLeealsFtrkhLkeslseel.sd..esp.nlaeeVehaL 192 ++ge+ L++a++F+r++L+++ ++++ d +++ +la eVe+ L XP_001770788.1 344 FPGESLLKKARTFSRNFLRTKHENNEcFDkwIITkDLAGEVEYNL 388 ******************997666664335855558*****9987 PP >> XP_001771518.1 predicted protein [Physcomitrella patens] # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 55.2 0.0 1.2e-18 1.4e-14 91 177 .. 40 127 .. 19 146 .. 0.81 2 ? -2.6 0.0 0.6 7.2e+03 166 188 .. 203 222 .. 179 234 .. 0.45 Alignments for each domain: == domain 1 score: 55.2 bits; conditional E-value: 1.2e-18 -----------------------------------------------..------------------------------------ CS Terpene_synth_N-terminal 91 seeeeddletvAlaFrLLRqhGydvssdvFkkFkdeegnfkeslsed..vkgllsLYeAshlstegeeiLeealsFtrkhLkesl 173 s++ ++d++++A+ F LL + G+++++ ++++ ++g+f s +++ v+g+++L +As++ +ge+ L++a +Ftr++Lke+l XP_001771518.1 40 SNSAQQDVDETAMVFPLLLKPGFHIKEVCLRQYY-KDGEFLDSGTSSiaVTGMFNLSRASQMLGPGETLLKKAWTFTRSFLKEKL 123 223334***************************9.78889887776678********************************9988 PP ---- CS Terpene_synth_N-terminal 174 seel 177 ++++ XP_001771518.1 124 ESNK 127 8765 PP == domain 2 score: -2.6 bits; conditional E-value: 0.6 ----------------------- CS Terpene_synth_N-terminal 166 rkhLkeslseelsdespnlaeeV 188 + hL e se + +++e+V XP_001771518.1 203 HDHL-EVTSEAA--AVAHMQEMV 222 3444.2222111..122333333 PP >> XP_001751332.1 predicted protein, partial [Physcomitrella patens] # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 54.6 0.0 1.7e-18 2.1e-14 59 115 .. 2 62 .] 1 62 [] 0.90 Alignments for each domain: == domain 1 score: 54.6 bits; conditional E-value: 1.7e-18 --------------------------------------.....------------------- CS Terpene_synth_N-terminal 59 idtLqrLGisyhFeeeIkeiLdeiyrsweekkseeeed.....dletvAlaFrLLRqhGydv 115 + + qrLGis++Fe+e++++L+++y +w++ ++ +++ d++++A+aFrLL hG+dv XP_001751332.1 2 VVRQQRLGISRYFEREVRQCLQYVYLYWKD-CGIGWASnstvqDVDDTAMAFRLLPAHGFDV 62 66779************************9.666666667899*****************98 PP Internal pipeline statistics summary: ------------------------------------- Query model(s): 1 (192 nodes) Target sequences: 35934 (13047009 residues) Passed MSV filter: 1334 (0.0371236); expected 718.7 (0.02) Passed bias filter: 652 (0.0181444); expected 718.7 (0.02) Passed Vit filter: 51 (0.00141927); expected 35.9 (0.001) Passed Fwd filter: 3 (8.34864e-05); expected 0.4 (1e-05) Initial search space (Z): 35934 [actual number of targets] Domain search space (domZ): 3 [number of targets reported over threshold] # CPU time: 0.48u 0.00s 00:00:00.48 Elapsed: 00:00:00.11 # Mc/sec: 21595.05 //